SNP Profiles matching PA150 [PER]

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	CT	AG	GG	CC	TT	AC	TT	TT	CC	AA	GG	CC	AG	CC
1._PA_150_[PER]	CT	AG	GG	CC	TT	AC	TT	TT	CC	AA	GG	CC	AG	CC
2._PA_150_[PER]	CT	AG	GG	CC	TT	AC	TT	TT	CC	AA	GG	CC	AG	CC
3._PA_150_[PER]	CT	AG	GG	CC	TT	AC	TT	TT	CC	AA	GG	CC	AG	CC
4._ICS_16	CT	GG	GG	CC	TT	AC	TT	TT	CC	AA	GG	CC	AG	CT
5._GC-08-067-1-89	CT	GG	GG	CC	TT	AC	TT	TT	CC	AA	GG	CC	AG	CT
6._PA_90_[PER]	CT	GG	GG	CC	TT	AC	TT	TT	CC	AA	GG	CC	AG	CT
7._RUQ_1635	_	AG	GG	CC	_	_	_	TT	_	_	_	CC	AA	_
8._ICS_16	CT	GG	GG	CC	TT	AC	TT	TT	CC	AA	GG	CC	AG	CT
9._ICS_16	CT	GG	GG	CC	TT	AC	TT	TT	CC	AA	GG	CC	AG	CT
10._ICS_16	CT	GG	GG	CC	TT	AC	TT	TT	CC	AA	GG	CC	AG	CT
11._ICS_16	CT	GG	GG	CC	TT	AC	TT	TT	CC	AA	GG	CC	AG	CT
12._ICS_16	CT	GG	GG	CC	TT	AC	TT	TT	CC	AA	GG	CC	AG	CT
13._ICS_16	CT	GG	GG	CC	TT	AC	TT	TT	CC	AA	GG	CC	AG	CT
14._ICS_16	CT	GG	GG	CC	TT	AC	TT	TT	CC	AA	GG	CC	AG	CT
15._ICS_16	CT	GG	GG	CC	TT	AC	TT	TT	CC	AA	GG	CC	AG	CT
16._GC-08-067-1-89	CT	GG	GG	CC	TT	AC	TT	TT	CC	AA	GG	CC	AG	CT
17._GC-08-067-1-89	CT	GG	GG	CC	TT	AC	TT	TT	CC	AA	GG	CC	AG	CT
18._GC-08-067-1-89	CT	GG	GG	CC	TT	AC	TT	TT	CC	AA	GG	CC	AG	CT
19._GC-08-067-1-89	CT	GG	GG	CC	TT	AC	TT	TT	CC	AA	GG	CC	AG	CT
20._GC-08-067-1-89	CT	GG	GG	CC	TT	AC	TT	TT	CC	AA	GG	CC	AG	CT
21._GC-08-067-1-89	CT	GG	GG	CC	TT	AC	TT	TT	CC	AA	GG	CC	AG	CT
22._GC-08-067-1-89	CT	GG	GG	CC	TT	AC	TT	TT	CC	AA	GG	CC	AG	CT
23._GC-08-067-1-89	CT	GG	GG	CC	TT	AC	TT	TT	CC	AA	GG	CC	AG	CT
24._ICS_16	CT	GG	GG	CC	TT	AC	TT	TT	CC	AA	GG	CC	AG	CT
25._GC-08-067-1-89	CT	GG	GG	CC	TT	AC	TT	TT	CC	AA	GG	CC	AG	CT

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	AA	CC	CT	CC	GG	GG	AA	TT	AC	CG	TT	CT	AC	AG
1._PA_150_[PER]	AA	CC	CT	CC	GG	GG	AA	TT	AC	CG	TT	CT	AC	AG
2._PA_150_[PER]	AA	CC	CT	CC	GG	GG	AA	TT	AC	CG	TT	CT	AC	AG
3._PA_150_[PER]	AA	CC	CT	CC	GG	GG	AA	TT	AC	CG	TT	CT	AC	AG
4._ICS_16	AA	_	CT	CC	GG	GG	AG	CT	AC	GG	TT	CT	AA	AG
5._GC-08-067-1-89	AA	_	CT	CC	GG	GG	AG	CT	AC	GG	TT	CT	AA	AG
6._PA_90_[PER]	AA	CG	CT	CC	GG	-	AA	CT	AC	GG	TT	CT	AA	AG
7._RUQ_1635	_	_	_	CC	GG	GG	_	TT	CC	CC	TT	CT	AC	AG
8._ICS_16	AA	CG	CT	CC	GG	GG	AG	CT	AC	GG	TT	CT	AA	AG
9._ICS_16	AA	CG	CT	CC	GG	GG	AG	CT	AC	GG	TT	CT	AA	AG
10._ICS_16	AA	CG	CT	CC	GG	GG	AG	CT	AC	GG	TT	CT	AA	AG
11._ICS_16	AA	CG	CT	CC	GG	GG	AG	CT	AC	GG	TT	CT	AA	AG
12._ICS_16	AA	CG	CT	CC	GG	GG	AG	CT	AC	GG	TT	CT	AA	AG
13._ICS_16	AA	CG	CT	CC	GG	GG	AG	CT	AC	GG	TT	CT	AA	AG
14._ICS_16	AA	CG	CT	CC	GG	GG	AG	CT	AC	GG	TT	CT	AA	AG
15._ICS_16	AA	CG	CT	CC	GG	GG	AG	CT	AC	GG	TT	CT	AA	AG
16._GC-08-067-1-89	AA	CG	CT	CC	GG	GG	AG	CT	AC	GG	TT	CT	AA	AG
17._GC-08-067-1-89	AA	CG	CT	CC	GG	GG	AG	CT	AC	GG	TT	CT	AA	AG
18._GC-08-067-1-89	AA	CG	CT	CC	GG	GG	AG	CT	AC	GG	TT	CT	AA	AG
19._GC-08-067-1-89	AA	CG	CT	CC	GG	GG	AG	CT	AC	GG	TT	CT	AA	AG
20._GC-08-067-1-89	AA	CG	CT	CC	GG	GG	AG	CT	AC	GG	TT	CT	AA	AG
21._GC-08-067-1-89	AA	CG	CT	CC	GG	GG	AG	CT	AC	GG	TT	CT	AA	AG
22._GC-08-067-1-89	AA	CG	CT	CC	GG	GG	AG	CT	AC	GG	TT	CT	AA	AG
23._GC-08-067-1-89	AA	CG	CT	CC	GG	GG	AG	CT	AC	GG	TT	CT	AA	AG
24._ICS_16	AA	CG	CT	CC	GG	GG	AG	CT	AC	GG	TT	CT	AA	AG
25._GC-08-067-1-89	AA	CG	CT	CC	GG	GG	AG	CT	AC	GG	TT	CT	AA	AG

	29	30	31	32	33	34	35	36	37	38
_Input profile	GG	AA	CC	GG	AA	CC	GG	AC	AA	GG	X_X	X_X	X_X	X_X
1._PA_150_[PER]	GG	AA	CC	GG	AA	CC	GG	AC	AA	GG	X_X	X_X	X_X	X_X
2._PA_150_[PER]	GG	AA	CC	GG	AA	CC	GG	AC	AA	GG	X_X	X_X	X_X	X_X
3._PA_150_[PER]	GG	AA	CC	GG	AA	CC	GG	AC	AA	GG	X_X	X_X	X_X	X_X
4._ICS_16	GG	AA	CC	GG	AA	CC	GG	AC	AA	GG	X_X	X_X	X_X	X_X
5._GC-08-067-1-89	GG	AA	CC	GG	AA	CC	GG	AC	AA	GG	X_X	X_X	X_X	X_X
6._PA_90_[PER]	GG	AA	CC	GG	AA	CC	GG	AC	AA	GG	X_X	X_X	X_X	X_X
7._RUQ_1635	_	AA	CC	GG	AC	CC	GG	AC	_	_	X_X	X_X	X_X	X_X
8._ICS_16	GG	AA	CC	GG	AA	CC	GG	AC	AA	GG	X_X	X_X	X_X	X_X
9._ICS_16	GG	AA	CC	GG	AA	CC	GG	AC	AA	GG	X_X	X_X	X_X	X_X
10._ICS_16	GG	AA	CC	GG	AA	CC	GG	AC	AA	GG	X_X	X_X	X_X	X_X
11._ICS_16	GG	AA	CC	GG	AA	CC	GG	AC	AA	GG	X_X	X_X	X_X	X_X
12._ICS_16	GG	AA	CC	GG	AA	CC	GG	AC	AA	GG	X_X	X_X	X_X	X_X
13._ICS_16	GG	AA	CC	GG	AA	CC	GG	AC	AA	GG	X_X	X_X	X_X	X_X
14._ICS_16	GG	AA	CC	GG	AA	CC	GG	AC	AA	GG	X_X	X_X	X_X	X_X
15._ICS_16	GG	AA	CC	GG	AA	CC	GG	AC	AA	GG	X_X	X_X	X_X	X_X
16._GC-08-067-1-89	GG	AA	CC	GG	AA	CC	GG	AC	AA	GG	X_X	X_X	X_X	X_X
17._GC-08-067-1-89	GG	AA	CC	GG	AA	CC	GG	AC	AA	GG	X_X	X_X	X_X	X_X
18._GC-08-067-1-89	GG	AA	CC	GG	AA	CC	GG	AC	AA	GG	X_X	X_X	X_X	X_X
19._GC-08-067-1-89	GG	AA	CC	GG	AA	CC	GG	AC	AA	GG	X_X	X_X	X_X	X_X
20._GC-08-067-1-89	GG	AA	CC	GG	AA	CC	GG	AC	AA	GG	X_X	X_X	X_X	X_X
21._GC-08-067-1-89	GG	AA	CC	GG	AA	CC	GG	AC	AA	GG	X_X	X_X	X_X	X_X
22._GC-08-067-1-89	GG	AA	CC	GG	AA	CC	GG	AC	AA	GG	X_X	X_X	X_X	X_X
23._GC-08-067-1-89	GG	AA	CC	GG	AA	CC	GG	AC	AA	GG	X_X	X_X	X_X	X_X
24._ICS_16	GG	AA	_	GG	AA	CC	GG	AC	AA	GG	X_X	X_X	X_X	X_X
25._GC-08-067-1-89	GG	AA	_	GG	AA	CC	GG	AC	AA	GG	X_X	X_X	X_X	X_X

Input profile: PA_150_[PER]

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: Marper D679

Dapeng Zhang, 2016

1._PA_150_[PER]

identical
38 shared markers

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Cocoa Research Institute of Ghana (CRIG), Ghana

Location: P70 1019

Dapeng Zhang, 2016

2._PA_150_[PER]

identical
38 shared markers

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Malaysian Cocoa Board (MCB), Malaysia

Location: Plot 1 - Row4 C0183 28

Dapeng Zhang, 2016

3._PA_150_[PER]

identical
38 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: Marper D 679

Dapeng Zhang, 2016

4._ICS_16

91.9 %
37 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8189 10

Dapeng Zhang, 2016

5._ICS_16 GC-08-067-1-89

91.9 %
37 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 10

Notes: 10

6._PA_90_[PER]

91.9 %
37 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: MARPER D 627

Dapeng Zhang, 2014

7._PA_30_[PER] RUQ_1635

91.3 %
23 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

8._ICS_16

90.8 %
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8189 5 > FP

Dapeng Zhang, 2016

9._ICS_16

90.8 %
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8189 3 > FP

Dapeng Zhang, 2016

10._ICS_16

90.8 %
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8189 1 > FP

Dapeng Zhang, 2016

11._ICS_16

90.8 %
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8189 12

Dapeng Zhang, 2016

12._ICS_16

90.8 %
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8189 8

Dapeng Zhang, 2016

13._ICS_16

90.8 %
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8189 7

Dapeng Zhang, 2016

14._ICS_16

90.8 %
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8189 6

Dapeng Zhang, 2016

15._ICS_16

90.8 %
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8189 2

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

16._ICS_16 GC-08-067-1-89

90.8 %
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1 > FP1

17._ICS_16 GC-08-067-1-89

90.8 %
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2

18._ICS_16 GC-08-067-1-89

90.8 %
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3 > FP3

19._ICS_16 GC-08-067-1-89

90.8 %
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5 > FP4

20._ICS_16 GC-08-067-1-89

90.8 %
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 6

Notes: 6

21._ICS_16 GC-08-067-1-89

90.8 %
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 7

Notes: 7

22._ICS_16 GC-08-067-1-89

90.8 %
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 8

Notes: 8

23._ICS_16 GC-08-067-1-89

90.8 %
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 12

Notes: 12

24._ICS_16

90.5 %
37 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8189 9 > FP

Dapeng Zhang, 2016

25._ICS_16 GC-08-067-1-89

90.5 %
37 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 9

Notes: 9 > FP2

Key to SNP Markers

Key to SNP Markers

1	TcSNP1520	2	TcSNP1484	3	TcSNP1458	4	TcSNP1442	5	TcSNP1414
6	TcSNP1350	7	TcSNP1270	8	TcSNP1253	9	TcSNP1165	10	TcSNP1075
11	TcSNP1062	12	TcSNP1060	13	TcSNP998	14	TcSNP994	15	TcSNP953
16	TcSNP929	17	TcSNP917	18	TcSNP891	19	TcSNP872	20	TcSNP723
21	TcSNP645	22	TcSNP619	23	TcSNP591	24	TcSNP577	25	TcSNP560
26	TcSNP534	27	TcSNP529	28	TcSNP469	29	TcSNP429	30	TcSNP372
31	TcSNP242	32	TcSNP230	33	TcSNP193	34	TcSNP151	35	TcSNP150
36	TcSNP144	37	TcSNP32	38	TcSNP25